Stover led 11-7 after the first quarter, 23-15 at the half and 40-24 after three quarters.
Jordan French scored 13 for Stover. Garrett Goetz had 13 points and eight rebounds. Zach Weiken scored eight and MacKenzie Knuth tallied eight.
Brock Young led Lincoln with nine.
Stover improved to 3-12 overall and 1-2 in the Kaysinger.